Publications

Found 31 results
Filters: Keyword is Genome  [Clear All Filters]
2023
Bermann M, Aguilar I, Lourenco D, Misztal I, Legarra A. Reliabilities of estimated breeding values in models with metafounders. Genet Sel Evol. 2023;55(1):6. doi:10.1186/s12711-023-00778-2.
Herry F, Hérault F, Lecerf F, et al. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics. 2023;24(1):271. doi:10.1186/s12864-023-09321-5.
2022
Varona L, Legarra A, Toro MA, Vitezica ZG. Genomic Prediction Methods Accounting for Nonadditive Genetic Effects. Methods Mol Biol. 2022;2467:219-243. doi:10.1007/978-1-0716-2205-6_8.
Elsen J-M. Genomic Prediction of Complex Traits, Principles, Overview of Factors Affecting the Reliability of Genomic Prediction, and Algebra of the Reliability. Methods Mol Biol. 2022;2467:45-76. doi:10.1007/978-1-0716-2205-6_2.
Iannuccelli N, Mary N, Bonnet N, et al. Genotyping data of French wild boar populations using porcine genome-wide genotyping array. BMC Res Notes. 2022;15(1):170. doi:10.1186/s13104-022-06052-w.
Wientjes YCJ, Bijma P, Calus MPL, Zwaan BJ, Vitezica ZG, van den Heuvel J. The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture. Genet Sel Evol. 2022;54(1):19. doi:10.1186/s12711-022-00709-7.
David I, Ricard A, Huynh-Tran V-H, Dekkers JCM, Gilbert H. Quality of breeding value predictions from longitudinal analyses, with application to residual feed intake in pigs. Genet Sel Evol. 2022;54(1):32. doi:10.1186/s12711-022-00722-w.
2021
Abdollahi-Arpanahi R, Lourenco D, Legarra A, Misztal I. Dissecting genetic trends to understand breeding practices in livestock: a maternal pig line example. Genet Sel Evol. 2021;53(1):89. doi:10.1186/s12711-021-00683-6.
2020
Morris KM, Hindle MM, Boitard S, et al. The Quail Genome: Insights into Social Behaviour, Seasonal Biology and Infectious Disease Response. BMC biology. 2020;18:14. doi:10.1186/s12915-020-0743-4.
Du K, Stöck M, Kneitz S, et al. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 2020;4(6):841-852. doi:10.1038/s41559-020-1166-x.
Bovo S, Ribani A, Muñoz M, et al. Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems. Genet Sel Evol. 2020;52(1):33. doi:10.1186/s12711-020-00553-7.
2017
Masuda Y, Misztal I, Legarra A, et al. Technical note: Avoiding the direct inversion of the numerator relationship matrix for genotyped animals in single-step genomic best linear unbiased prediction solved with the preconditioned conjugate gradient. J Anim Sci. 2017;95(1):49-52. doi:10.2527/jas.2016.0699.
2015
Andersson L, Archibald AL, Bottema CD, et al. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol. 2015;16:57. doi:10.1186/s13059-015-0622-4.
2014
Zhang G, Li C, Li Q, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014;346(6215):1311-20. doi:10.1126/science.1251385.
Lee MOk, Yang E, Morisson M, et al. Mapping and genotypic analysis of the NK-lysin gene in chicken. Genet Sel Evol. 2014;46:43. doi:10.1186/1297-9686-46-43.
Jiang Y, Xie M, Chen W, et al. The sheep genome illuminates biology of the rumen and lipid metabolism. Science. 2014;344(6188):1168-73. doi:10.1126/science.1252806.
Misztal I, Legarra A, Aguilar I. Using recursion to compute the inverse of the genomic relationship matrix. J Dairy Sci. 2014;97(6):3943-52. doi:10.3168/jds.2013-7752.
2013
Huang Y, Li Y, Burt DW, et al. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet. 2013;45(7):776-83. doi:10.1038/ng.2657.
Fard SShirazi, Jarrin M, Boije H, Fillon V, All-Eriksson C, Hallböök F. Heterogenic final cell cycle by chicken retinal Lim1 horizontal progenitor cells leads to heteroploid cells with a remaining replicated genome. PLoS One. 2013;8(3):e59133. doi:10.1371/journal.pone.0059133.
2012
Audemard E, Schiex T, Faraut T. Detecting long tandem duplications in genomic sequences. BMC bioinformatics. 2012;13:83. doi:10.1186/1471-2105-13-83.
Frésard L, Leroux S, Dehais P, et al. Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics. 2012;13:551. doi:10.1186/1471-2164-13-551.
Servin B, Faraut T, Iannuccelli N, Zelenika D, Milan D. High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly. BMC Genomics. 2012;13:585. doi:10.1186/1471-2164-13-585.
2009
Faraut T, de Givry S, Hitte C, et al. Contribution of radiation hybrids to genome mapping in domestic animals. Cytogenet Genome Res. 2009;126(1-2):21-33. doi:10.1159/000245904.
2008
Douaud M, Feve K, Gerus M, et al. Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics. 2008;9:129. doi:10.1186/1471-2164-9-129.
Amadou C, Pascal G, Mangenot S, et al. Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome research. 2008;18:1472–83. doi:10.1101/gr.076448.108.

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