Publications
Found 25 results
Filters: Author is Faraut, Thomas [Clear All Filters]
Enhancer/gene relationships: Need for more reliable genome-wide reference sets. Front Bioinform. 2023;3:1092853. doi:10.3389/fbinf.2023.1092853.
Large-scale detection and characterization of inter-chromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets. Genome Res. 2023. doi:10.1101/gr.277787.123.
Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. Mol Ecol. 2022. doi:10.1111/mec.16579.
Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species. Front Genet. 2021;12:665153. doi:10.3389/fgene.2021.665153.
. Correlation Networks Provide New Insights into the Architecture of Testicular Steroid Pathways in Pigs. Genes (Basel). 2021;12(4). doi:10.3390/genes12040551.
Unraveling the history of the genus Gallus through whole genome sequencing. Mol Phylogenet Evol. 2021;158:107044. doi:10.1016/j.ympev.2020.107044.
Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs. RNA Biol. 2019:1-15. doi:10.1080/15476286.2019.1621621.
Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing. PLoS One. 2017;12(11):e0187617. doi:10.1371/journal.pone.0187617.
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 2017;546(7656):148-152. doi:10.1038/nature22380.
Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds. BMC Genomics. 2015;16:1055. doi:10.1186/s12864-015-2259-9.
Pathways and genes involved in steroid hormone metabolism in male pigs: a review and update. J Steroid Biochem Mol Biol. 2014;140:44-55. doi:10.1016/j.jsbmb.2013.11.001.
. The sheep genome illuminates biology of the rumen and lipid metabolism. Science. 2014;344(6188):1168-73. doi:10.1126/science.1252806.
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet. 2013;45(7):776-83. doi:10.1038/ng.2657.
Génomique des canards. INRA - Productions Animales. 2013;26(5):391-402.
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature Biotechnology. 2013;31:135-41. Available at: http://dx.doi.org/10.1038/nbt.2478.
Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012;491:393 - 398. Available at: http://dx.doi.org/10.1038/nature11622.
Detecting long tandem duplications in genomic sequences. BMC bioinformatics. 2012;13:83. doi:10.1186/1471-2105-13-83.
. A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics. 2012;13:513. doi:10.1186/1471-2164-13-513.
High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly. BMC Genomics. 2012;13:585. doi:10.1186/1471-2164-13-585.
. Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism. BMC Genomics. 2011;12:548. doi:10.1186/1471-2164-12-548.
Statistical confidence measures for genome maps: application to the validation of genome assemblies. Bioinformatics. 2010;26:3035-3042. doi:10.1093/bioinformatics/btq598.
. The carnitine acetyltransferase gene (CRAT): a characterization of porcine transcripts with insights into the 5'-end variants of mammalian transcripts and their possible sub-cellular localization. Cell Mol Biol Lett. 2009;14(1):90-9. doi:10.2478/s11658-008-0036-3.
. Characterization of porcine ASB6 gene and transcripts-comparison of mammalian transcripts. Anim Biotechnol. 2008;19(3):138-43. doi:10.1080/10495390801984721.
. A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence. Genet Sel Evol. 2005;37(2):229-51. doi:10.1051/gse:2004046.
Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse. Mamm Genome. 2004;15(9):732-9. doi:10.1007/s00335-004-3003-y.