Publications

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2021

Christensen OF, Börner V, Varona L, Legarra A. Genetic evaluation including intermediate omics features. Genetics. 2021;219(2). doi:10.1093/genetics/iyab130.
Schiavo G, Bovo S, Muñoz M, et al. Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds. Anim Genet. 2021. doi:10.1111/age.13045.
Matysik S, Krautbauer S, Liebisch G, et al. Short chain fatty acids and bile acids in human faeces are associated with the intestinal cholesterol conversion status. Br J Pharmacol. 2021. doi:10.1111/bph.15440.
Monteiro ANTR, Brossard L, Gilbert H, Dourmad J-Y. Environmental Impacts and Their Association With Performance and Excretion Traits in Growing Pigs. Front Vet Sci. 2021;8:677857. doi:10.3389/fvets.2021.677857.
Bourdon C, Boussaha M, Bardou P, et al. In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets. Sci Rep. 2021;11(1):19580. doi:10.1038/s41598-021-98639-9.
Huang Y, Breda J, Savietto D, Debrusse A-M, Combes S, Fortun-Lamothe L. Part-time grouping of rabbit does in enriched housing: effects on performances, injury occurrence and enrichment use. Animal. 2021;15(12):100390. doi:10.1016/j.animal.2021.100390.
Allais-Bonnet A, Hintermann A, Deloche M-C, et al. Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Mol Biol Evol. 2021. doi:10.1093/molbev/msab021.
Mariadassou M, Suez M, Sathyakumar S, et al. Unraveling the history of the genus Gallus through whole genome sequencing. Mol Phylogenet Evol. 2021;158:107044. doi:10.1016/j.ympev.2020.107044.
Tixier-Boichard M, Fabre S, Dhorne-Pollet S, et al. Tissue Resources for the Functional Annotation of Animal Genomes. Front Genet. 2021;12:666265. doi:10.3389/fgene.2021.666265.
Godon J-J, Bize A, Ngo H, et al. Bacterial Consumption of T4 Phages. Microorganisms. 2021;9(9). doi:10.3390/microorganisms9091852.
Abdollahi-Arpanahi R, Lourenco D, Legarra A, Misztal I. Dissecting genetic trends to understand breeding practices in livestock: a maternal pig line example. Genet Sel Evol. 2021;53(1):89. doi:10.1186/s12711-021-00683-6.
Lefebvre R, Larroque H, Barbey S, et al. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. J Dairy Sci. 2021. doi:10.3168/jds.2020-18228.
Robic A, Faraut T, Feve K, et al. Correlation Networks Provide New Insights into the Architecture of Testicular Steroid Pathways in Pigs. Genes (Basel). 2021;12(4). doi:10.3390/genes12040551.
Messad F, Louveau I, Renaudeau D, Gilbert H, Gondret F. Analysis of merged whole blood transcriptomic datasets to identify circulating molecular biomarkers of feed efficiency in growing pigs. BMC Genomics. 2021;22(1):501. doi:10.1186/s12864-021-07843-4.
Denoyelle L, de Villemereuil P, Boyer F, et al. Genetic Variations and Differential DNA Methylation to Face Contrasted Climates in Small Ruminants: An Analysis on Traditionally-Managed Sheep and Goats. Front Genet. 2021;12:745284. doi:10.3389/fgene.2021.745284.
Beaumont M, Mussard E, Barilly C, et al. Developmental Stage, Solid Food Introduction and Suckling Cessation Differentially Influence the Co-maturation of the Gut Microbiota and Intestinal Epithelium in Rabbits. J Nutr. 2021. doi:10.1093/jn/nxab411.
Bovo S, Schiavo G, Ribani A, et al. Describing variability in pig genes involved in coronavirus infections for a One Health perspective in conservation of animal genetic resources. Sci Rep. 2021;11(1):3359. doi:10.1038/s41598-021-82956-0.
Jehl F, Muret K, Bernard M, et al. Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2021;11(1):9463. doi:10.1038/s41598-021-89158-8.
Jehl F, Degalez F, Bernard M, et al. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 2021;12:655707. doi:10.3389/fgene.2021.655707.
Forneris NS, Garcia-Baccino CA, Cantet RJC, Vitezica ZG. Estimating inbreeding depression for growth and reproductive traits using pedigree and genomic methods in Argentinean Brangus cattle. J Anim Sci. 2021. doi:10.1093/jas/skab289.
Kraimi N, Lormant F, Calandreau L, et al. Microbiota and stress: a loop that impacts memory. Psychoneuroendocrinology. 2021;136:105594. doi:10.1016/j.psyneuen.2021.105594.
Raoul J, Elsen JM. The levels of artificial insemination and missing sire information make genomic selection not always beneficial in meat sheep. Animal. 2021:100040. doi:10.1016/j.animal.2020.100040.
Luise D, Le Sciellour M, Buchet A, et al. The fecal microbiota of piglets during weaning transition and its association with piglet growth across various farm environments. PLoS One. 2021;16(4):e0250655. doi:10.1371/journal.pone.0250655.
Brito LF, Bedere N, Douhard F, et al. Review: Genetic selection of high-yielding dairy cattle toward sustainable farming systems in a rapidly changing world. Animal. 2021:100292. doi:10.1016/j.animal.2021.100292.
Beaumont M, Lencina C, Painteaux L, et al. A mix of functional amino acids and grape polyphenols promotes the growth of piglets, modulates the gut microbiota in vivo and regulates epithelial homeostasis in intestinal organoids. Amino Acids. 2021. doi:10.1007/s00726-021-03082-9.
Douhard F, Douhard M, Gilbert H, Monget P, Gaillard J-M, Lemaître J-F. How much energetic trade-offs limit selection? Insights from livestock and related laboratory model species. Evol Appl. 2021;14(12):2726-2749. doi:10.1111/eva.13320.
Rodríguez W, Mazet O, Grusea S, et al. Correction to: The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure. Heredity (Edinb). 2021. doi:10.1038/s41437-021-00414-z.
González-Diéguez D, Legarra A, Charcosset A, et al. Genomic prediction of hybrid crops allows disentangling dominance and epistasis. Genetics. 2021. doi:10.1093/genetics/iyab026.
Lebret B, Lenoir H, Fonseca A, Riquet J, Mercat MJ. Finishing season and feeding resources influence the quality of products from extensive-system Gascon pigs. Part 2: muscle traits and sensory quality of dry-cured ham. Animal. 2021:100305. doi:10.1016/j.animal.2021.100305.
Hazard D, Kempeneers A, Delval E, Bouix J, Foulquié D, Boissy A. Maternal reactivity of ewes at lambing is genetically linked to their behavioural reactivity in an arena test. J Anim Breed Genet. 2021. doi:10.1111/jbg.12656.

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