Publications

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2023

Parejo M, Talenti A, Richardson M, Vignal A, Barnett M, Wragg D. AmelHap: Leveraging drone whole-genome sequence data to create a honey bee HapMap. Sci Data. 2023;10(1):198. doi:10.1038/s41597-023-02097-z.
Ben-Jemaa S, Adam G, Boussaha M, et al. Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
Rice ES, Alberdi A, Alfieri J, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Talebi R, Ghaffari MReza, Fabre S, Mardi M, Alamouti MKazemi. Comparison of the growth performance between pure Moghani sheep and crosses with Texel or Booroola sheep carrying major genes contributing to muscularity and prolificacy. Anim Biotechnol. 2023:1-12. doi:10.1080/10495398.2023.2165933.
Garcia A, Aguilar I, Legarra A, Tsuruta S, Misztal I, Lourenco D. Correction: Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP. Genet Sel Evol. 2023;55(1):26. doi:10.1186/s12711-023-00799-x.
Wientjes YCJ, Bijma P, van den Heuvel J, Zwaan BJ, Vitezica ZG, Calus MPL. The long-term effects of genomic selection: 2. Changes in allele frequencies of causal loci and new mutations. Genetics. 2023. doi:10.1093/genetics/iyad141.
Sautier M, Chiron P. Challenges and opportunities for reducing anthelmintic use in ruminant livestock systems: Insights from a sheep farmer survey in France. Prev Vet Med. 2023;221:106078. doi:10.1016/j.prevetmed.2023.106078.
Liaubet L, Guilmineau C, Lefort G, et al. Plasma H-NMR metabolic and amino acid profiles of newborn piglets from two lines divergently selected for residual feed intake. Sci Rep. 2023;13(1):7127. doi:10.1038/s41598-023-34279-5.
Shang H, Field DL, Paun O, et al. Drivers of genomic landscapes of differentiation across a Populus divergence gradient. Mol Ecol. 2023;32(15):4348-4361. doi:10.1111/mec.17034.
Poklukar K, Mestre C, Škrlep M, et al. A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits. Genet Sel Evol. 2023;55(1):88. doi:10.1186/s12711-023-00858-3.
Gmel AImogen, Guichard M, Dainat B, et al. Identification of runs of homozygosity in Western honey bees () using whole-genome sequencing data. Ecol Evol. 2023;13(1):e9723. doi:10.1002/ece3.9723.
Fouikar SEl, Duranthon V, Helies V, et al. Multigenerational Effects of a Complex Human-Relevant Exposure during Folliculogenesis and Preimplantation Embryo Development: The FEDEXPO Study. Toxics. 2023;11(5). doi:10.3390/toxics11050425.
Déserts ADanguy des, Durand N, Servin B, et al. Comparison of genomic-enabled cross selection criteria for the improvement of inbred line breeding populations. G3 (Bethesda). 2023. doi:10.1093/g3journal/jkad195.
Janati-Idrissi S, de Abreu MRoza, Guyomar C, et al. Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production. Nucleic Acids Res. 2023. doi:10.1093/nar/gkad1154.
Bermann M, Aguilar I, Lourenco D, Misztal I, Legarra A. Reliabilities of estimated breeding values in models with metafounders. Genet Sel Evol. 2023;55(1):6. doi:10.1186/s12711-023-00778-2.
Le Graverand Q, Marie-Etancelin C, Meynadier A, Weisbecker J-L, Marcon D, Tortereau F. Predicting feed efficiency traits in growing lambs from their ruminal microbiota. Animal. 2023;17(6):100824. doi:10.1016/j.animal.2023.100824.
Muráni E, Gilbert H, Rauw WM. Editorial: Genotype-by-environment interaction in farm animals: from measuring to understanding. Front Genet. 2023;14:1267334. doi:10.3389/fgene.2023.1267334.
Herry F, Hérault F, Lecerf F, et al. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics. 2023;24(1):271. doi:10.1186/s12864-023-09321-5.
Rougemont Q, Leroy T, Rondeau EB, Koop B, Bernatchez L. Allele surfing causes maladaptation in a Pacific salmon of conservation concern. PLoS Genet. 2023;19(9):e1010918. doi:10.1371/journal.pgen.1010918.
Parey E, Louis A, Montfort J, et al. Genome structures resolve the early diversification of teleost fishes. Science. 2023;379(6632):572-575. doi:10.1126/science.abq4257.
Ithurbide M, Wang H, Fassier T, et al. Multivariate analysis of milk metabolite measures shows potential for deriving new resilience phenotypes. J Dairy Sci. 2023. doi:10.3168/jds.2023-23332.
Beaumont M, Lencina C, Feve K, et al. Disruption of the primocolonizing microbiota alters epithelial homeostasis and imprints stem cells in the colon of neonatal piglets. FASEB J. 2023;37(10):e23149. doi:10.1096/fj.202301182R.
Steyn Y, Lawlor T, Masuda Y, et al. Nonparallel genome changes within subpopulations over time contributed to genetic diversity within the US Holstein population. J Dairy Sci. 2023. doi:10.3168/jds.2022-21914.
Macé T, González-García E, Kövér G, Hazard D, Taghipoor M. PhenoBR: a model to phenotype body condition dynamics in meat sheep. Animal. 2023;17(6):100845. doi:10.1016/j.animal.2023.100845.
David I, Ricard A. An improved transmissibility model to detect transgenerational transmitted environmental effects. Genet Sel Evol. 2023;55(1):66. doi:10.1186/s12711-023-00833-y.
Fetiveau M, Savietto D, Fillon V, Bannelier C, Pujol S, Fortun-Lamothe L. Effect of outdoor grazing-area access time and enrichment on space and pasture use, behaviour, health and growth traits of weaned rabbits. Animal. 2023;17(3):100724. doi:10.1016/j.animal.2023.100724.
Legarra A, Gonzalez-Dieguez DOmar, Charcosset A, Vitezica ZG. Impact of interpopulation distance on dominance variance and average heterosis in hybrid populations within species. Genetics. 2023;224(2). doi:10.1093/genetics/iyad059.
Machefert C, Robert-Granié C, Lagriffoul G, et al. Opportunities and limits of commercial farm data to study the genetic determinism of feed efficiency throughout lactation in dairy sheep. Animal. 2023;17(9):100951. doi:10.1016/j.animal.2023.100951.
Ben Abdelkrim A, Ithurbide M, Larsen T, Schmidely P, Friggens NC. Milk metabolites can characterise individual differences in animal resilience to a nutritional challenge in lactating dairy goats. Animal. 2023;17(4):100727. doi:10.1016/j.animal.2023.100727.
Antonios S, Legarra A, Pong-Wong R, Astruc JM, Rodríguez-Ramilo ST, Vitezica ZG. Partitioning of the genetic trends of French dairy sheep in Mendelian samplings and long-term contributions. J Dairy Sci. 2023. doi:10.3168/jds.2022-23009.

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