Publications

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2023

Carvalho AVitorino, Hennequet-Antier C, Rouger R, et al. Thermal conditioning of quail embryos has transgenerational and reversible long-term effects. J Anim Sci Biotechnol. 2023;14(1):124. doi:10.1186/s40104-023-00924-2.
Boitard S, Liaubet L, Paris C, et al. Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and divergent selection between the dam and sire lines. Genet Sel Evol. 2023;55(1):13. doi:10.1186/s12711-023-00789-z.
Jourdain J, Barasc H, Faraut T, et al. Large-scale detection and characterization of inter-chromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets. Genome Res. 2023. doi:10.1101/gr.277787.123.
Leroy T. Re-evaluating the driving force behind mutations. Elife. 2023;12. doi:10.7554/eLife.89706.
Mussard E, Lencina C, Boudry G, et al. Culture of Piglet Intestinal 3D Organoids from Cryopreserved Epithelial Crypts and Establishment of Cell Monolayers. J Vis Exp. 2023;(192). doi:10.3791/64917.
Beaumont M, Lencina C, Bertide A, et al. The Early Life Microbiota Is Not a Major Factor Underlying the Susceptibility to Postweaning Diarrhea in Piglets. Microbiol Spectr. 2023:e0069423. doi:10.1128/spectrum.00694-23.
Faux P, Ding L, Ramirez-Aristeguieta LMiguel, et al. Neanderthal introgression in SCN9A impacts mechanical pain sensitivity. Commun Biol. 2023;6(1):958. doi:10.1038/s42003-023-05286-z.
Hoellinger T, Mestre C, Aschard H, et al. Enhancer/gene relationships: Need for more reliable genome-wide reference sets. Front Bioinform. 2023;3:1092853. doi:10.3389/fbinf.2023.1092853.
G Boggio M, Christensen OF, Legarra A, Meynadier A, Marie-Etancelin C. Microbiability of milk composition and genetic control of microbiota effects in sheep. J Dairy Sci. 2023. doi:10.3168/jds.2022-22948.
Paganini J, Faux P, Beley S, Picard C, Chiaroni J, Di Cristofaro J. HLA-F transcriptional and protein differential expression according to its genetic polymorphisms. HLA. 2023;102(5):578-589. doi:10.1111/tan.15087.
Guerbette T, Beaumont M, Andriamihaja M, et al. Obesogenic diet leads to luminal overproduction of the complex IV inhibitor H S and mitochondrial dysfunction in mouse colonocytes. FASEB J. 2023;37(4):e22853. doi:10.1096/fj.202201971R.
Bussiman F, Chen C-Y, Holl J, et al. Boundaries for genotype, phenotype, and pedigree truncation in genomic evaluations in pigs. J Anim Sci. 2023. doi:10.1093/jas/skad273.
Amiri S, Puillet L, Huau C, Fassier T, Rupp R, Friggens NC. Analysis of reproduction success, growth and milk trajectories and response to nutritional challenge in two Alpine goat lines selected on divergent longevity. Animal. 2023;17(11):101004. doi:10.1016/j.animal.2023.101004.
Cisse S, Bahut M, Marais C, et al. Fine characterization and microbiota assessment as keys to understanding the positive effect of standardized natural citrus extract on broiler chickens. J Anim Sci. 2023;101. doi:10.1093/jas/skad069.
Hakimzadeh A, Asbun AAbdala, Albanese D, et al. A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Mol Ecol Resour. 2023. doi:10.1111/1755-0998.13847.
Lenoir G, Flatres-Grall L, Muñoz-Tamayo R, David I, Friggens NC. Disentangling the dynamics of energy allocation to develop a proxy for robustness of fattening pigs. Genet Sel Evol. 2023;55(1):77. doi:10.1186/s12711-023-00851-w.
Boggio GMartinez, Marie-Etancelin C, Menras J-M, et al. A large database linking the rumen bacterial composition and milk traits in Lacaune sheep. Sci Data. 2023;10(1):17. doi:10.1038/s41597-022-01912-3.
Meynadier A, Marie-Etancelin C, Palevich N. Editorial: Host genome and metagenome interactions for improved ruminant health and performance. Front Microbiol. 2023;14:1160074. doi:10.3389/fmicb.2023.1160074.
Tırınk C, Önder H, François D, et al. Comparison of the data mining and machine learning algorithms for predicting the final body weight for Romane sheep breed. PLoS One. 2023;18(8):e0289348. doi:10.1371/journal.pone.0289348.
Manunza A, Ramirez-Diaz J, Cozzi P, et al. Genetic diversity and historical demography of underutilised goat breeds in North-Western Europe. Sci Rep. 2023;13(1):20728. doi:10.1038/s41598-023-48005-8.
Parejo M, Talenti A, Richardson M, Vignal A, Barnett M, Wragg D. AmelHap: Leveraging drone whole-genome sequence data to create a honey bee HapMap. Sci Data. 2023;10(1):198. doi:10.1038/s41597-023-02097-z.
Ben-Jemaa S, Adam G, Boussaha M, et al. Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
Rice ES, Alberdi A, Alfieri J, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Talebi R, Ghaffari MReza, Fabre S, Mardi M, Alamouti MKazemi. Comparison of the growth performance between pure Moghani sheep and crosses with Texel or Booroola sheep carrying major genes contributing to muscularity and prolificacy. Anim Biotechnol. 2023:1-12. doi:10.1080/10495398.2023.2165933.
Garcia A, Aguilar I, Legarra A, Tsuruta S, Misztal I, Lourenco D. Correction: Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP. Genet Sel Evol. 2023;55(1):26. doi:10.1186/s12711-023-00799-x.
Wientjes YCJ, Bijma P, van den Heuvel J, Zwaan BJ, Vitezica ZG, Calus MPL. The long-term effects of genomic selection: 2. Changes in allele frequencies of causal loci and new mutations. Genetics. 2023. doi:10.1093/genetics/iyad141.
Sautier M, Chiron P. Challenges and opportunities for reducing anthelmintic use in ruminant livestock systems: Insights from a sheep farmer survey in France. Prev Vet Med. 2023;221:106078. doi:10.1016/j.prevetmed.2023.106078.
Liaubet L, Guilmineau C, Lefort G, et al. Plasma H-NMR metabolic and amino acid profiles of newborn piglets from two lines divergently selected for residual feed intake. Sci Rep. 2023;13(1):7127. doi:10.1038/s41598-023-34279-5.
Shang H, Field DL, Paun O, et al. Drivers of genomic landscapes of differentiation across a Populus divergence gradient. Mol Ecol. 2023;32(15):4348-4361. doi:10.1111/mec.17034.
Poklukar K, Mestre C, Škrlep M, et al. A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits. Genet Sel Evol. 2023;55(1):88. doi:10.1186/s12711-023-00858-3.

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