Publications
Found 31 results
Filters: Author is Klopp, Christophe [Clear All Filters]
Genome structures resolve the early diversification of teleost fishes. Science. 2023;379(6632):572-575. doi:10.1126/science.abq4257.
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
An ancient truncated duplication of the anti-Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family. Mol Ecol Resour. 2022;22(6):2411-2428. doi:10.1111/1755-0998.13620.
Generation of a chromosome-level genome assembly for Pacific halibut (Hippoglossus stenolepis) and characterization of its sex-determining genomic region. Mol Ecol Resour. 2022;22(7):2685-2700. doi:10.1111/1755-0998.13641.
Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2021;11(1):9463. doi:10.1038/s41598-021-89158-8.
A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Sci Rep. 2021;11(1):21544. doi:10.1038/s41598-021-01066-z.
MINTIA: a metagenomic INserT integrated assembly and annotation tool. PeerJ. 2021;9:e11885. doi:10.7717/peerj.11885.
RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 2021;12:655707. doi:10.3389/fgene.2021.655707.
A supernumerary "B-sex" chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus. Curr Biol. 2021;31(21):4800-4809.e9. doi:10.1016/j.cub.2021.08.030.
Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained. Front Genet. 2021;12:659287. doi:10.3389/fgene.2021.659287.
Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals. Mol Biol Evol. 2020. doi:10.1093/molbev/msaa249.
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2020;10(1):20457. doi:10.1038/s41598-020-77586-x.
Molecular signatures of muscle growth and composition deciphered by the meta-analysis of age-related public transcriptomics data. Physiol Genomics. 2020;52(8):322-332. doi:10.1152/physiolgenomics.00020.2020.
Multi-tissue Siberian sturgeon RNA sequencing data. Data Brief. 2020;31:105820. doi:10.1016/j.dib.2020.105820.
. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics. 2020;21(1):552. doi:10.1186/s12864-020-06959-3.
Siberian sturgeon multi-tissue reference transcriptome database. Database (Oxford). 2020;2020. doi:10.1093/database/baaa082.
. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 2020;4(6):841-852. doi:10.1038/s41559-020-1166-x.
Structure of the intergenic spacers in chicken ribosomal DNA. Genet Sel Evol. 2019;51(1):59. doi:10.1186/s12711-019-0501-7.
Transcriptome variation in response to gastrointestinal nematode infection in goats. PLoS One. 2019;14(6):e0218719. doi:10.1371/journal.pone.0218719.
Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout. BMC Genomics. 2018;19(1):482. doi:10.1186/s12864-018-4860-1.
Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017;49(1):6. doi:10.1186/s12711-016-0275-0.
Variant discovery in the sheep milk transcriptome using RNA sequencing. BMC Genomics. 2017;18(1):170. doi:10.1186/s12864-017-3581-1.
. Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing. Sci Rep. 2015;5:18399. doi:10.1038/srep18399.
. Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. G3 (Bethesda). 2015;5(4):517-29. doi:10.1534/g3.115.016865.