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EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences.

TitleEUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences.
Publication TypeJournal Article
Year of Publication2003
AuthorsFoissac, S, Bardou, P, Moisan, A, Cros, M-J, Schiex, T
JournalNucleic Acids Res
Volume31
Issue13
Pagination3742-5
Date Published2003 Jul 01
ISSN1362-4962
KeywordsAlgorithms, Codon, Initiator, Computer Graphics, DNA, Complementary, DNA, Plant, Eukaryotic Cells, Genes, Genome, Internet, RNA Splice Sites, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Software, User-Computer Interface
Abstract

EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGene....

Alternate JournalNucleic Acids Res.
PubMed ID12824408
PubMed Central IDPMC168992