Publications
Found 34 results
Filters: Keyword is Genome [Clear All Filters]
Drivers of genomic landscapes of differentiation across a Populus divergence gradient. Mol Ecol. 2023;32(15):4348-4361. doi:10.1111/mec.17034.
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Reliabilities of estimated breeding values in models with metafounders. Genet Sel Evol. 2023;55(1):6. doi:10.1186/s12711-023-00778-2.
. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics. 2023;24(1):271. doi:10.1186/s12864-023-09321-5.
Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
Genomic Prediction Methods Accounting for Nonadditive Genetic Effects. Methods Mol Biol. 2022;2467:219-243. doi:10.1007/978-1-0716-2205-6_8.
. Genomic Prediction of Complex Traits, Principles, Overview of Factors Affecting the Reliability of Genomic Prediction, and Algebra of the Reliability. Methods Mol Biol. 2022;2467:45-76. doi:10.1007/978-1-0716-2205-6_2.
. Genotyping data of French wild boar populations using porcine genome-wide genotyping array. BMC Res Notes. 2022;15(1):170. doi:10.1186/s13104-022-06052-w.
The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture. Genet Sel Evol. 2022;54(1):19. doi:10.1186/s12711-022-00709-7.
. Quality of breeding value predictions from longitudinal analyses, with application to residual feed intake in pigs. Genet Sel Evol. 2022;54(1):32. doi:10.1186/s12711-022-00722-w.
. Dissecting genetic trends to understand breeding practices in livestock: a maternal pig line example. Genet Sel Evol. 2021;53(1):89. doi:10.1186/s12711-021-00683-6.
. The Quail Genome: Insights into Social Behaviour, Seasonal Biology and Infectious Disease Response. BMC biology. 2020;18:14. doi:10.1186/s12915-020-0743-4.
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 2020;4(6):841-852. doi:10.1038/s41559-020-1166-x.
Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems. Genet Sel Evol. 2020;52(1):33. doi:10.1186/s12711-020-00553-7.
Technical note: Avoiding the direct inversion of the numerator relationship matrix for genotyped animals in single-step genomic best linear unbiased prediction solved with the preconditioned conjugate gradient. J Anim Sci. 2017;95(1):49-52. doi:10.2527/jas.2016.0699.
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol. 2015;16:57. doi:10.1186/s13059-015-0622-4.
Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014;346(6215):1311-20. doi:10.1126/science.1251385.
Mapping and genotypic analysis of the NK-lysin gene in chicken. Genet Sel Evol. 2014;46:43. doi:10.1186/1297-9686-46-43.
The sheep genome illuminates biology of the rumen and lipid metabolism. Science. 2014;344(6188):1168-73. doi:10.1126/science.1252806.
Using recursion to compute the inverse of the genomic relationship matrix. J Dairy Sci. 2014;97(6):3943-52. doi:10.3168/jds.2013-7752.
. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet. 2013;45(7):776-83. doi:10.1038/ng.2657.
Heterogenic final cell cycle by chicken retinal Lim1 horizontal progenitor cells leads to heteroploid cells with a remaining replicated genome. PLoS One. 2013;8(3):e59133. doi:10.1371/journal.pone.0059133.
. Detecting long tandem duplications in genomic sequences. BMC bioinformatics. 2012;13:83. doi:10.1186/1471-2105-13-83.
. Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics. 2012;13:551. doi:10.1186/1471-2164-13-551.
High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly. BMC Genomics. 2012;13:585. doi:10.1186/1471-2164-13-585.
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