Publications

Found 17 results
Filters: Author is Bardou, Philippe  [Clear All Filters]
2023
Rice ES, Alberdi A, Alfieri J, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Herry F, Hérault F, Lecerf F, et al. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics. 2023;24(1):271. doi:10.1186/s12864-023-09321-5.
Ben-Jemaa S, Adam G, Boussaha M, et al. Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
2022
Desvignes T, Bardou P, Montfort J, et al. FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes. Mol Biol Evol. 2022. doi:10.1093/molbev/msac004.
Consortium VGoats, Nijman IJ, Rosen BD, et al. Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. Mol Ecol. 2022. doi:10.1111/mec.16579.
2021
Allais-Bonnet A, Hintermann A, Deloche M-C, et al. Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Mol Biol Evol. 2021. doi:10.1093/molbev/msab021.
Bourdon C, Boussaha M, Bardou P, et al. In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets. Sci Rep. 2021;11(1):19580. doi:10.1038/s41598-021-98639-9.
Bardou P, Laguerre S, Haddad SMaman, et al. MINTIA: a metagenomic INserT integrated assembly and annotation tool. PeerJ. 2021;9:e11885. doi:10.7717/peerj.11885.
Ben Braiek M, Moreno-Romieux C, Allain C, et al. A Nonsense Variant in Gene Causes Respiratory Failure Associated with Increased Lamb Mortality in French Lacaune Dairy Sheep. Genes (Basel). 2021;13(1). doi:10.3390/genes13010045.
Jehl F, Degalez F, Bernard M, et al. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 2021;12:655707. doi:10.3389/fgene.2021.655707.
2020
Talouarn E, Bardou P, Palhière I, et al. Genome wide association analysis on semen volume and milk yield using different strategies of imputation to whole genome sequence in French dairy goats. BMC Genet. 2020;21(1):19. doi:10.1186/s12863-020-0826-9.
Talouarn E, Teissier M, Bardou P, et al. Using sequence variants of a QTL region improves the accuracy of genomic evaluation in French Saanen goats. J Dairy Sci. 2020. doi:10.3168/jds.2020-18837.
2019
Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F. RumimiR: a detailed microRNA database focused on ruminant species. Database (Oxford). 2019;2019. doi:10.1093/database/baz099.
2017
Martin P, Palhière I, Maroteau C, et al. A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content. Sci Rep. 2017;7(1):1872. doi:10.1038/s41598-017-02052-0.
Demars J, Cano M, Drouilhet L, et al. Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep. Mol Biol Evol. 2017;34(7):1722-1729. doi:10.1093/molbev/msx114.
2014
Tosser-Klopp G, Bardou P, Bouchez O, et al. Design and Characterization of a 52K SNP Chip for Goats. PLoS ONE. 2014;9:e86227. doi:10.1371/journal.pone.0086227.
2003
Foissac S, Bardou P, Moisan A, Cros M-J, Schiex T. EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences. Nucleic Acids Res. 2003;31(13):3742-5.