Publications
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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC bioinformatics. 2011;12:253. doi:10.1186/1471-2105-12-253.
. Asymptotic distribution of the "orthogonal" quantitative transmission disequilibrium test in a structured population: exact formula. Statistical applications in genetics and molecular biology. 2010;9:Article 11. doi:10.1534/genetics.108.100032.
. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell. 2010;143(6):1018-29. doi:10.1016/j.cell.2010.11.020.
Integrative mapping analysis of chicken microchromosome 16 organization. BMC Genomics. 2010;11:616. doi:10.1186/1471-2164-11-616.
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism. Nature. 2010;466(7306):642-6. doi:10.1038/nature09190.
The carnitine acetyltransferase gene (CRAT): a characterization of porcine transcripts with insights into the 5'-end variants of mammalian transcripts and their possible sub-cellular localization. Cell Mol Biol Lett. 2009;14(1):90-9. doi:10.2478/s11658-008-0036-3.
. Detecting selective sweeps: a new approach based on hidden markov models. Genetics. 2009;181:1567-78. doi:10.1534/genetics.108.100032.
. Nature. 2009;457(7232):1028-32. doi:10.1038/nature07759.
Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics. 2008;9:129. doi:10.1186/1471-2164-9-129.
Characterization of porcine ASB6 gene and transcripts-comparison of mammalian transcripts. Anim Biotechnol. 2008;19(3):138-43. doi:10.1080/10495390801984721.
. A combinatorial code for CPE-mediated translational control. Cell. 2008;132(3):434-48. doi:10.1016/j.cell.2007.12.038.
. Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nat Methods. 2008;5(7):629-35. doi:10.1038/nmeth.1216.
A general definition and nomenclature for alternative splicing events. PLoS Comput Biol. 2008;4(8):e1000147. doi:10.1371/journal.pcbi.1000147.
. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic Acids Res. 2007;35(Web Server issue):W297-9. doi:10.1093/nar/gkm311.
. Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteins. J Biol Chem. 2007;282(8):5273-86. doi:10.1074/jbc.M610294200.
Cross-presentation of caspase-cleaved apoptotic self antigens in HIV infection. Nat Med. 2007;13(12):1431-9. doi:10.1038/nm1679.
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res. 2007;17(6):746-59. doi:10.1101/gr.5660607.
Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families. Proc Natl Acad Sci U S A. 2006;103(7):2237-42. doi:10.1073/pnas.0510700103.
High resolution physical map of porcine chromosome 7 QTL region and comparative mapping of this region among vertebrate genomes. BMC Genomics. 2006;7:13. doi:10.1186/1471-2164-7-13.
Linkage disequilibrium interval mapping of quantitative trait loci. BMC Genomics. 2006;7:54. doi:10.1186/1471-2164-7-54.
. Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequence. BMC Genomics. 2005;6:12. doi:10.1186/1471-2164-6-12.
A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence. Genet Sel Evol. 2005;37(2):229-51. doi:10.1051/gse:2004046.
Integrating alternative splicing detection into gene prediction. BMC Bioinformatics. 2005;6:25. doi:10.1186/1471-2105-6-25.
. Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse. Mamm Genome. 2004;15(9):732-9. doi:10.1007/s00335-004-3003-y.
A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes. BMC Genomics. 2004;5:66. doi:10.1186/1471-2164-5-66.