Publications

Found 26 results
Filters: Keyword is Gene Expression Profiling  [Clear All Filters]
2024
Huau G, Liaubet L, Gourdine J-L, Riquet J, Renaudeau D. Multi-tissue metabolic and transcriptomic responses to a short-term heat stress in swine. BMC Genomics. 2024;25(1):99. doi:10.1186/s12864-024-09999-1.
2015
Schmid M, Smith J, Burt DW, et al. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015;145(2):78-179. doi:10.1159/000430927.
2014
Oster M, Muráni E, Ponsuksili S, et al. Transcriptional responses of PBMC in psychosocially stressed animals indicate an alerting of the immune system in female but not in castrated male pigs. BMC Genomics. 2014;15:967. doi:10.1186/1471-2164-15-967.
Frésard L, Leroux S, Servin B, et al. Transcriptome-wide investigation of genomic imprinting in chicken. Nucleic Acids Res. 2014;42(6):3768-82. doi:10.1093/nar/gkt1390.
2012
Molette C, Theron L, Marty-Gasset N, Fernandez X, Rémignon H. Current advances in proteomic analysis of (fatty) liver. J Proteomics. 2012;75(14):4290-5. doi:10.1016/j.jprot.2012.04.041.
Djebali-Quelen S, Lagarde J, Kapranov P, et al. Evidence for transcript networks composed of chimeric RNAs in human cells. PLoS One. 2012;7(1):e28213. doi:10.1371/journal.pone.0028213.
Bonnefont CMD, Rainard P, Cunha P, et al. Genetic susceptibility to S. aureus mastitis in sheep: differential expression of mammary epithelial cells in response to live bacteria or supernatant. Physiol Genomics. 2012;44(7):403-16. doi:10.1152/physiolgenomics.00155.2011.
Djebali-Quelen S, Davis CA, Merkel A, et al. Landscape of transcription in human cells. Nature. 2012;489(7414):101-8. doi:10.1038/nature11233.
Bax ML, Chambon C, Marty-Gasset N, Rémignon H, Fernandez X, Molette C. Proteomic profile evolution during steatosis development in ducks. Poult Sci. 2012;91(1):112-20. doi:10.3382/ps.2011-01663.
Gondret F, Riquet J, Tacher S, et al. Towards candidate genes affecting body fatness at the SSC7 QTL by expression analyses. J Anim Breed Genet. 2012;129(4):316-24. doi:10.1111/j.1439-0388.2011.00965.x.
2011
Mou C, Pitel F, Gourichon D, et al. Cryptic patterning of avian skin confers a developmental facility for loss of neck feathering. PLoS Biol. 2011;9(3):e1001028. doi:10.1371/journal.pbio.1001028.
Toufeer M, Bonnefont CMD, Foulon E, et al. Gene expression profiling of dendritic cells reveals important mechanisms associated with predisposition to Staphylococcus infections. PLoS One. 2011;6(8):e22147. doi:10.1371/journal.pone.0022147.
Le Cao KA, Boitard S, Besse P. Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC bioinformatics. 2011;12:253. doi:10.1186/1471-2105-12-253.
Bonnet A, Bevilacqua C, Benne F, et al. Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by laser capture microdissection. BMC Genomics. 2011;12:417. doi:10.1186/1471-2164-12-417.
Bonnefont CMD, Toufeer M, Caubet C, et al. Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge with Staphylococcus epidermidis and Staphylococcus aureus. BMC Genomics. 2011;12:208. doi:10.1186/1471-2164-12-208.
2010
Ozsolak F, Kapranov P, Foissac S, et al. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell. 2010;143(6):1018-29. doi:10.1016/j.cell.2010.11.020.
2009
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. Nature. 2009;457(7232):1028-32. doi:10.1038/nature07759.
2008
Djebali-Quelen S, Kapranov P, Foissac S, et al. Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nat Methods. 2008;5(7):629-35. doi:10.1038/nmeth.1216.
Sammeth M, Foissac S, Guigó R. A general definition and nomenclature for alternative splicing events. PLoS Comput Biol. 2008;4(8):e1000147. doi:10.1371/journal.pcbi.1000147.
Bonnet A, Cao KALê, San Cristobal M, et al. In vivo gene expression in granulosa cells during pig terminal follicular development. Reproduction. 2008;136(2):211-24. doi:10.1530/REP-07-0312.
Bonnet A, Dalbiès-Tran R, Sirard MA. Opportunities and challenges in applying genomics to the study of oogenesis and folliculogenesis in farm animals. Reproduction. 2008;135(2):119-28. doi:10.1530/REP-07-0331.
2007
Jaffrézic F, de Koning D-J, Boettcher PJ, et al. Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication). Genet Sel Evol. 2007;39(6):633-50. doi:10.1051/gse:2007029.
Sørensen P, Bonnet A, Buitenhuis B, et al. Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication). Genet Sel Evol. 2007;39(6):651-68. doi:10.1051/gse:2007030.
Ferré PJ, Liaubet L, Concordet D, et al. Longitudinal analysis of gene expression in porcine skeletal muscle after post-injection local injury. Pharm Res. 2007;24(8):1480-9. doi:10.1007/s11095-007-9266-8.
2006
Bonnet A, Frappart PO, Dehais P, Tosser-Klopp G, Hatey F. Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization. Reprod Biol Endocrinol. 2006;4:35. doi:10.1186/1477-7827-4-35.

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