Publications

Found 29 results
Filters: Keyword is Genomics  [Clear All Filters]
2023
Shang H, Field DL, Paun O, et al. Drivers of genomic landscapes of differentiation across a Populus divergence gradient. Mol Ecol. 2023;32(15):4348-4361. doi:10.1111/mec.17034.
Rice ES, Alberdi A, Alfieri J, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Bermann M, Aguilar I, Lourenco D, Misztal I, Legarra A. Reliabilities of estimated breeding values in models with metafounders. Genet Sel Evol. 2023;55(1):6. doi:10.1186/s12711-023-00778-2.
Herry F, Hérault F, Lecerf F, et al. Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens. BMC Genomics. 2023;24(1):271. doi:10.1186/s12864-023-09321-5.
Ben-Jemaa S, Adam G, Boussaha M, et al. Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
2022
Mollandin F, Gilbert H, Croiseau P, Rau A. Accounting for overlapping annotations in genomic prediction models of complex traits. BMC Bioinformatics. 2022;23(1):365. doi:10.1186/s12859-022-04914-5.
Jasonowicz AJ, Simeon A, Zahm M, et al. Generation of a chromosome-level genome assembly for Pacific halibut (Hippoglossus stenolepis) and characterization of its sex-determining genomic region. Mol Ecol Resour. 2022;22(7):2685-2700. doi:10.1111/1755-0998.13641.
Fang F, Li J, Guo M, et al. Genomic evaluation and genome-wide association studies for total number of teats in a combined American and Danish Yorkshire pig populations selected in China. J Anim Sci. 2022;100(7). doi:10.1093/jas/skac174.
Varona L, Legarra A, Toro MA, Vitezica ZG. Genomic Prediction Methods Accounting for Nonadditive Genetic Effects. Methods Mol Biol. 2022;2467:219-243. doi:10.1007/978-1-0716-2205-6_8.
Mei Q, Vitezica ZG, Li J, Zhao S, Legarra A, Xiang T. Impacts of additive, dominance, and inbreeding depression effects on genomic evaluation by combining two SNP chips in Canadian Yorkshire pigs bred in China. Genet Sel Evol. 2022;54(1):69. doi:10.1186/s12711-022-00760-4.
Wientjes YCJ, Bijma P, Calus MPL, Zwaan BJ, Vitezica ZG, van den Heuvel J. The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture. Genet Sel Evol. 2022;54(1):19. doi:10.1186/s12711-022-00709-7.
David I, Ricard A, Huynh-Tran V-H, Dekkers JCM, Gilbert H. Quality of breeding value predictions from longitudinal analyses, with application to residual feed intake in pigs. Genet Sel Evol. 2022;54(1):32. doi:10.1186/s12711-022-00722-w.
2020
Garcia-Baccino CA, Lourenco DAL, Miller S, Cantet RJC, Vitezica ZG. Estimating dominance genetic variances for growth traits in American Angus males using genomic models. J Anim Sci. 2020;98(1). doi:10.1093/jas/skz384.
Bovo S, Ribani A, Muñoz M, et al. Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems. Genet Sel Evol. 2020;52(1):33. doi:10.1186/s12711-020-00553-7.
2017
Masuda Y, Misztal I, Legarra A, et al. Technical note: Avoiding the direct inversion of the numerator relationship matrix for genotyped animals in single-step genomic best linear unbiased prediction solved with the preconditioned conjugate gradient. J Anim Sci. 2017;95(1):49-52. doi:10.2527/jas.2016.0699.
2016
Mazet O, Rodríguez W, Grusea S, Boitard S, Chikhi L. On the importance of being structured: instantaneous coalescence rates and human evolution--lessons for ancestral population size inference?. Heredity (Edinb). 2016;116(4):362-71. doi:10.1038/hdy.2015.104.
2015
Andersson L, Archibald AL, Bottema CD, et al. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol. 2015;16:57. doi:10.1186/s13059-015-0622-4.
Schmid M, Smith J, Burt DW, et al. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015;145(2):78-179. doi:10.1159/000430927.
2014
Zhang G, Li C, Li Q, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014;346(6215):1311-20. doi:10.1126/science.1251385.
2012
An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489(7414):57-74. doi:10.1038/nature11247.
Djebali-Quelen S, Davis CA, Merkel A, et al. Landscape of transcription in human cells. Nature. 2012;489(7414):101-8. doi:10.1038/nature11233.
Hocquette J-F, Capel C, David V, et al. Objectives and applications of phenotyping network set-up for livestock. Anim Sci J. 2012;83(7):517-28. doi:10.1111/j.1740-0929.2012.01015.x.
2008
Hazard D, Liaubet L, San Cristobal M, Mormède P. Gene array and real time PCR analysis of the adrenal sensitivity to adrenocorticotropic hormone in pig. BMC Genomics. 2008;9:101. doi:10.1186/1471-2164-9-101.
Hazard D, Liaubet L, San Cristobal M, Mormède P. Gene array and real time PCR analysis of the adrenal sensitivity to adrenocorticotropic hormone in pig. BMC genomics. 2008;9:101. doi:10.1371/journal.pone.0060045.
Sammeth M, Foissac S, Guigó R. A general definition and nomenclature for alternative splicing events. PLoS Comput Biol. 2008;4(8):e1000147. doi:10.1371/journal.pcbi.1000147.

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