Publications

Found 23 results
Filters: Author is Boitard, S.  [Clear All Filters]
2017
Fariello MI, Boitard S, Mercier S, et al. Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach. MOLECULAR ECOLOGY. 2017;26(14):3700-3714.
2016
Mazet O, Rodríguez W, Grusea S, Boitard S, Chikhi L. On the importance of being structured: instantaneous coalescence rates and human evolution--lessons for ancestral population size inference?. Heredity (Edinb). 2016;116(4):362-71. doi:10.1038/hdy.2015.104.
Boitard S, Rodríguez W, Jay F, Mona S, Austerlitz F. Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach. PLoS Genet. 2016;12(3):e1005877. doi:10.1371/journal.pgen.1005877.
Boitard S, Boussaha M, Capitan A, Rocha D, Servin B. Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds. Genetics. 2016;203(1):433-50. doi:10.1534/genetics.115.181594.
2015
Roux P-F, Boitard S, Blum Y, et al. Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. G3 (Bethesda). 2015;5(4):517-29. doi:10.1534/g3.115.016865.
Bonhomme M, Boitard S, San Clemente H, Dumas B, Young N, Jacquet C. Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms. Mol Biol Evol. 2015;32(8):2097-110. doi:10.1093/molbev/msv092.
2014
Sallé G, Moreno C, Boitard S, et al. Functional investigation of a QTL affecting resistance to Haemonchus contortus in sheep. Vet Res. 2014;45:68. doi:10.1186/1297-9716-45-68.
2013
Fariello M-I, Boitard S, Naya H, San Cristobal M, Servin B. Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations. Genetics. 2013. doi:10.1534/genetics.112.147231.
Boitard S, Rocha D. Detection of signatures of selective sweeps in the Blonde d'Aquitaine cattle breed. Anim Genet. 2013;44(5):579-83. doi:10.1111/age.12042.
Boitard S, Kofler R, Francoise P, Robelin D, Schlötterer C, Futschik A. Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples. Molecular Ecology Resources. 2013:n/a–n/a. doi:10.1111/1755-0998.12063.
2012
Boitard S, Schlötterer C, Nolte V, Pandey RVinay, Futschik A. Detecting selective sweeps from pooled next-generation sequencing samples. Molecular biology and evolution. 2012;29:2177-86. doi:10.1093/molbev/mss090.
Kijas JW, Lenstra JA, Hayes B, et al. Genome-Wide Analysis of the World’s Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. PLoS Biol. 2012;10:e1001258. doi:10.1371/journal.pbio.1001258.
Beghain J, Boitard S, Weiss B, Boussaha M, Gut I, Rocha D. Genome-wide linkage disequilibrium in the Blonde d’Aquitaine cattle breed. Journal of Animal Breeding and Genetics. 2012:n/a–n/a. doi:10.1111/j.1439-0388.2012.01020.x.
2011
Douaud M, Feve K, Pituello F, et al. Epilepsy caused by an abnormal alternative splicing with dosage effect of the SV2A gene in a chicken model. PloS one. 2011;6:e26932. doi:10.1371/journal.pone.0026932.
Douaud M, Feve K, Pituello F, et al. Epilepsy caused by an abnormal alternative splicing with dosage effect of the SV2A gene in a chicken model. PLoS One. 2011;6(10):e26932. doi:10.1371/journal.pone.0026932.
Amigues Y, Boitard S, Bertrand C, San Cristobal M, Rocha D. Genetic characterization of the Blonde d’Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations. Journal of animal breeding and genetics. 2011;128:201-8. doi:10.1111/j.1439-0388.2010.00890.x.
Le Cao KA, Boitard S, Besse P. Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC bioinformatics. 2011;12:253. doi:10.1186/1471-2105-12-253.
2010
Boitard S, Mangin B, Aza\"ıs J-M. Asymptotic distribution of the "orthogonal" quantitative transmission disequilibrium test in a structured population: exact formula. Statistical applications in genetics and molecular biology. 2010;9:Article 11. doi:10.1534/genetics.108.100032.
Bonhomme M, Chevalet C, Servin B, et al. Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended. Genetics. 2010;186:241-262. doi:10.1534/genetics.110.117275.
Boitard S, Chevalet C, Mercat M-J, et al. Genetic variability, structure and assignment of Spanish and French pig populations based on a large sampling. Animal genetics. 2010;41:608-18. doi:10.1111/j.1365-2052.2010.02061.x.
2009
Boitard S, Schlötterer C, Futschik A. Detecting selective sweeps: a new approach based on hidden markov models. Genetics. 2009;181:1567-78. doi:10.1534/genetics.108.100032.
2007
Boitard S, Loisel P. Probability distribution of haplotype frequencies under the two-locus Wright-Fisher model by diffusion approximation. Theor Popul Biol. 2007;71(3):380-91. doi:10.1016/j.tpb.2006.12.007.
2006
Boitard S, Abdallah J, de Rochambeau H, Cierco-Ayrolles C, Mangin B. Linkage disequilibrium interval mapping of quantitative trait loci. BMC Genomics. 2006;7:54. doi:10.1186/1471-2164-7-54.