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Publications

Found 25 results

Filters: Author is Klopp, Christophe [Clear All Filters]

2021

Jehl F, Muret K, Bernard M, et al. Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2021;11(1):9463. doi:10.1038/s41598-021-89158-8.

Adolfi MC, Du K, Kneitz S, et al. A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Sci Rep. 2021;11(1):21544. doi:10.1038/s41598-021-01066-z.

Bardou P, Laguerre S, Haddad SMaman, et al. MINTIA: a metagenomic INserT integrated assembly and annotation tool. PeerJ. 2021;9:e11885. doi:10.7717/peerj.11885.

Jehl F, Degalez F, Bernard M, et al. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 2021;12:655707. doi:10.3389/fgene.2021.655707.

Degalez F, Jehl F, Muret K, et al. Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained. Front Genet. 2021;12:659287. doi:10.3389/fgene.2021.659287.

2020

Policarpo M, Fumey J, Lafargeas P, et al. Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals. Mol Biol Evol. 2020. doi:10.1093/molbev/msaa249.

Jehl F, Muret K, Bernard M, et al. An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2020;10(1):20457. doi:10.1038/s41598-020-77586-x.

Bazile J, Jaffrézic F, Dehais P, et al. Molecular signatures of muscle growth and composition deciphered by the meta-analysis of age-related public transcriptomics data. Physiol Genomics. 2020;52(8):322-332. doi:10.1152/physiolgenomics.00020.2020.

Klopp C, Cabau C, Lasalle A, Di Landro S, Greif G, Vizziano-Cantonnet D. Multi-tissue Siberian sturgeon RNA sequencing data. Data Brief. 2020;31:105820. doi:10.1016/j.dib.2020.105820.

Wen M, Feron R, Pan Q, et al. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics. 2020;21(1):552. doi:10.1186/s12864-020-06959-3.

Klopp C, Cabau C, Greif G, Lasalle A, Di Landro S, Vizziano-Cantonnet D. Siberian sturgeon multi-tissue reference transcriptome database. Database (Oxford). 2020;2020. doi:10.1093/database/baaa082.

Du K, Stöck M, Kneitz S, et al. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 2020;4(6):841-852. doi:10.1038/s41559-020-1166-x.

2019

Dyomin A, Galkina S, Fillon V, et al. Structure of the intergenic spacers in chicken ribosomal DNA. Genet Sel Evol. 2019;51(1):59. doi:10.1186/s12711-019-0501-7.

Aboshady HM, Mandonnet N, Stear MJ, et al. Transcriptome variation in response to gastrointestinal nematode infection in goats. PLoS One. 2019;14(6):e0218719. doi:10.1371/journal.pone.0218719.

2018

Verrier ER, Genet C, Laloë D, et al. Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout. BMC Genomics. 2018;19(1):482. doi:10.1186/s12864-018-4860-1.

2017

Muret K, Klopp C, Wucher V, et al. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017;49(1):6. doi:10.1186/s12711-016-0275-0.

Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Tosser-Klopp G, Arranz JJosé. Variant discovery in the sheep milk transcriptome using RNA sequencing. BMC Genomics. 2017;18(1):170. doi:10.1186/s12864-017-3581-1.

2015

Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Robert-Granié C, Tosser-Klopp G, Arranz JJosé. Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing. Sci Rep. 2015;5:18399. doi:10.1038/srep18399.

Roux P-F, Boitard S, Blum Y, et al. Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. G3 (Bethesda). 2015;5(4):517-29. doi:10.1534/g3.115.016865.

Suárez-Vega A, Gutiérrez-Gil B, Benavides J, et al. Combining GWAS and RNA-Seq Approaches for Detection of the Causal Mutation for Hereditary Junctional Epidermolysis Bullosa in Sheep. PLoS One. 2015;10(5):e0126416. doi:10.1371/journal.pone.0126416.

Meslin C, Désert C, Callebaut I, et al. Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome. Genome Biol Evol. 2015;7(5):1332-48. doi:10.1093/gbe/evv072.

Frésard L, Leroux S, Roux P-F, et al. Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates. PLoS One. 2015;10(5):e0126776. doi:10.1371/journal.pone.0126776.

Schmid M, Smith J, Burt DW, et al. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015;145(2):78-179. doi:10.1159/000430927.

2014

Tosser-Klopp G, Bardou P, Bouchez O, et al. Design and Characterization of a 52K SNP Chip for Goats. PLoS ONE. 2014;9:e86227. doi:10.1371/journal.pone.0086227.

2012

Frésard L, Leroux S, Dehais P, et al. Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics. 2012;13:551. doi:10.1186/1471-2164-13-551.