Publications

Found 31 results
Filters: Author is Klopp, Christophe  [Clear All Filters]
2023
Parey E, Louis A, Montfort J, et al. Genome structures resolve the early diversification of teleost fishes. Science. 2023;379(6632):572-575. doi:10.1126/science.abq4257.
Rice ES, Alberdi A, Alfieri J, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. BMC Biol. 2023;21(1):267. doi:10.1186/s12915-023-01758-0.
Ben-Jemaa S, Adam G, Boussaha M, et al. Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Sci Rep. 2023;13(1):12155. doi:10.1038/s41598-023-38774-7.
2022
Wen M, Pan Q, Jouanno E, et al. An ancient truncated duplication of the anti-Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family. Mol Ecol Resour. 2022;22(6):2411-2428. doi:10.1111/1755-0998.13620.
Jasonowicz AJ, Simeon A, Zahm M, et al. Generation of a chromosome-level genome assembly for Pacific halibut (Hippoglossus stenolepis) and characterization of its sex-determining genomic region. Mol Ecol Resour. 2022;22(7):2685-2700. doi:10.1111/1755-0998.13641.
2021
Jehl F, Muret K, Bernard M, et al. Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2021;11(1):9463. doi:10.1038/s41598-021-89158-8.
Adolfi MC, Du K, Kneitz S, et al. A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Sci Rep. 2021;11(1):21544. doi:10.1038/s41598-021-01066-z.
Bardou P, Laguerre S, Haddad SMaman, et al. MINTIA: a metagenomic INserT integrated assembly and annotation tool. PeerJ. 2021;9:e11885. doi:10.7717/peerj.11885.
Jehl F, Degalez F, Bernard M, et al. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 2021;12:655707. doi:10.3389/fgene.2021.655707.
Imarazene B, Du K, Beille S, et al. A supernumerary "B-sex" chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus. Curr Biol. 2021;31(21):4800-4809.e9. doi:10.1016/j.cub.2021.08.030.
Degalez F, Jehl F, Muret K, et al. Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained. Front Genet. 2021;12:659287. doi:10.3389/fgene.2021.659287.
2020
Policarpo M, Fumey J, Lafargeas P, et al. Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals. Mol Biol Evol. 2020. doi:10.1093/molbev/msaa249.
Jehl F, Muret K, Bernard M, et al. An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. Sci Rep. 2020;10(1):20457. doi:10.1038/s41598-020-77586-x.
Bazile J, Jaffrézic F, Dehais P, et al. Molecular signatures of muscle growth and composition deciphered by the meta-analysis of age-related public transcriptomics data. Physiol Genomics. 2020;52(8):322-332. doi:10.1152/physiolgenomics.00020.2020.
Klopp C, Cabau C, Lasalle A, Di Landro S, Greif G, Vizziano-Cantonnet D. Multi-tissue Siberian sturgeon RNA sequencing data. Data Brief. 2020;31:105820. doi:10.1016/j.dib.2020.105820.
Wen M, Feron R, Pan Q, et al. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics. 2020;21(1):552. doi:10.1186/s12864-020-06959-3.
Klopp C, Cabau C, Greif G, Lasalle A, Di Landro S, Vizziano-Cantonnet D. Siberian sturgeon multi-tissue reference transcriptome database. Database (Oxford). 2020;2020. doi:10.1093/database/baaa082.
Du K, Stöck M, Kneitz S, et al. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nat Ecol Evol. 2020;4(6):841-852. doi:10.1038/s41559-020-1166-x.
2019
Dyomin A, Galkina S, Fillon V, et al. Structure of the intergenic spacers in chicken ribosomal DNA. Genet Sel Evol. 2019;51(1):59. doi:10.1186/s12711-019-0501-7.
Aboshady HM, Mandonnet N, Stear MJ, et al. Transcriptome variation in response to gastrointestinal nematode infection in goats. PLoS One. 2019;14(6):e0218719. doi:10.1371/journal.pone.0218719.
2018
Verrier ER, Genet C, Laloë D, et al. Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout. BMC Genomics. 2018;19(1):482. doi:10.1186/s12864-018-4860-1.
2017
Muret K, Klopp C, Wucher V, et al. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017;49(1):6. doi:10.1186/s12711-016-0275-0.
Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Tosser-Klopp G, Arranz JJosé. Variant discovery in the sheep milk transcriptome using RNA sequencing. BMC Genomics. 2017;18(1):170. doi:10.1186/s12864-017-3581-1.
2015
Suárez-Vega A, Gutiérrez-Gil B, Klopp C, Robert-Granié C, Tosser-Klopp G, Arranz JJosé. Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing. Sci Rep. 2015;5:18399. doi:10.1038/srep18399.
Roux P-F, Boitard S, Blum Y, et al. Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. G3 (Bethesda). 2015;5(4):517-29. doi:10.1534/g3.115.016865.

Pages